How to cite AMICI
=================

**Citable DOI for the latest AMICI release:**

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3992844.svg
   :target: https://doi.org/10.5281/zenodo.3992844
   :alt: AMICI release DOI

There is a list of `publications using AMICI <https://amici.readthedocs.io/en/latest/references.html>`_.
If you used AMICI in your work, we are happy to include
your project, please let us know via a Github issue.

When using AMICI in your project, please cite

* Fröhlich, F., Weindl, D., Schälte, Y., Pathirana, D., Paszkowski, Ł., Lines, G.T., Stapor, P. and Hasenauer, J., 2021.
  AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models. Bioinformatics, btab227,
  `DOI:10.1093/bioinformatics/btab227 <https://doi.org/10.1093/bioinformatics/btab227>`_.

  .. code-block:: bibtex

     @article{frohlich2020amici,
       title={AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models},
       author={Fr{\"o}hlich, Fabian and Weindl, Daniel and Sch{\"a}lte, Yannik and Pathirana, Dilan and Paszkowski, {\L}ukasz and Lines, Glenn Terje and Stapor, Paul and Hasenauer, Jan},
       journal = {Bioinformatics},
       year = {2021},
       month = {04},
       issn = {1367-4803},
       doi = {10.1093/bioinformatics/btab227},
       note = {btab227},
       eprint = {https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btab227/36866220/btab227.pdf},
     }

When presenting work that employs AMICI, feel free to use one of the icons in
`documentation/gfx/ <https://github.com/AMICI-dev/AMICI/tree/main/doc/gfx>`_,
which are available under a
`CC0 <https://github.com/AMICI-dev/AMICI/tree/main/doc/gfx/LICENSE.md>`_
license:

.. image:: https://raw.githubusercontent.com/AMICI-dev/AMICI/main/doc/gfx/logo_text.png
   :target: https://raw.githubusercontent.com/AMICI-dev/AMICI/main/doc/gfx/logo_text.png
   :height: 75
   :alt: AMICI LOGO