Examples

Various example notebooks.

• Getting Started in AMICI
• SBML import, observation model, sensitivity analysis, data export and visualization
• Using PEtab
• PEtab 2.0 import
• AMICI Python example “Experimental Conditions”
• Steady-state computation in AMICI
• Debugging simulation failures
• Speeding up model import and simulation - with a focus on large models
• AMICI & JAX
• Simulating AMICI models using JAX
• AMICI Python example “splines”
• Spline implementation of JAK2-STAT5 signaling pathway